PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003854.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 533aa    MW: 59318.6 Da    PI: 8.3163
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003854.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1392.6e-12261041790
                     FAR1  17 skskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                              ++++++ r+g ++ ++ vCs+eg++++++++     ++  +r+r+++r+gCkak++ k   +g ++v+ +++ H+H+++
  Itr_sc003854.1_g00001.1  26 QSTTRKGRDGVVVLKQVVCSREGFKQSSSSTssttqSTVVKRRRVTNRVGCKAKVVFKVIPNGCYCVHFIKERHTHSMC 104
                              566677899******************99998877666667899*********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1025104IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.237335371IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-5343366IPR007527Zinc finger, SWIM-type
SMARTSM005750.0072346373IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDSASGGCDE GYSIDIGVEG SACDMQSTTR KGRDGVVVLK QVVCSREGFK QSSSSTSSTT  60
QSTVVKRRRV TNRVGCKAKV VFKVIPNGCY CVHFIKERHT HSMCSIIAKQ FLKVNRNLDA  120
GHKLFVASCV RANIGPTRSY RLFKEIVGEY SNVGATSVDF QNFKRDLMAY ILIDDAQLFI  180
DTLFKRSELC EAFGFEYDVD EGDQLSRVFL ADVISMKNFS LFGDVVSFDA TYRTNGRKLK  240
DIVWDNSLDP NGFELRMEEY GLGDNGPRLD RSLKIVFFGS FSNGHSSLVE FLVYYDIAIS  300
AQRHAQAKLN ADVVSLTDCD GCVSYVIKDG DHRTWRVELA LNDYCSSCSC KMFERMGLLC  360
KHIFFVYKYR GLESIPSRYL VHRWTKGACL HPIFHIDGKL VDQSAKVENV RVLTNLMWSD  420
IYACVGLADS NIGRLSQLRH VINEQRQIFL QDGSENGNGV AVGSKQSVIN SFCGDVSMGS  480
TVDVHNHVQA KNKGSGKRLK TARERAASKC TVLSNQGDAT LVMNMSIIVG HAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16569KRRRV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-17FAR1-related sequence 5